Selected Abstracts, Presentations, and Other Documents

Anderson, J.W., F. C. Newton, J. Hardin, R.H. Tukey, and K.E. Richter. 1995. Responses of a biomarker P450 RGS to sediment extracts which provide an estimate of ecological risk. Presented at the Fifth Symposium on Environmental Toxicology and Risk Assessment: Biomarkers and Risk Assessment, Denver, CO, April 3-6, 1995.

Arias-Thode, Y.M., J. Leather, G. Rosen, A. Obraztsova, and K. Scheckel. 2007. Poster Presentation. Bacterial and Benthic Community Response to Sediment Amendments. Strategic Environmental Research and Development Program, Washington, D.C., December 2007.

Arias-Thode, Y.M., M. Ceruti, L. Duffy. 2007. Poster Presentation. Joint Project Management Information Systems Software Support Science and Technology Team Efforts. Chemical and Biological Information Systems Conference. Austin, TX. January 2007.

Arias-Thode, Y.M., K. Richter, A. Wotawa-Bergen, D.B. Chadwick, J. Kan, and K. Nealson. 2011. Development of Microbial Fuel Cell Prototypes for Examination of the Temporal and Spatial Response of Anodic Bacterial Communities in Marine Sediments.OCEANS 2011, Santander, Spain, June 6-9, 2011.

Brandenberger J.M., C.R. Suslick, and R.K. Johnston. 2005. Data Report: Conventional Water Chemistry for 2005 Storm Events in Support of the Storm Water Studies in Sinclair and Dyes Inlet, Washington. Report PNNL-15563, Dec 2005. Prepared for the Puget Sound Naval Shipyard and Intermediate Maintenance Facility Project ENVVEST Bremerton, Washington, under Contract DE-AC06-76RLO 1830. Pacific Northwest National Laboratory Richland, Washington, 234 pp.

Brandenberger J.M., C.R. Suslick, and R.K. Johnston. 2005. Data Report: Organic Water Chemistry for 2005 Storm Events in Support of the Storm Water Studies in Sinclair and Dyes Inlet, Washington. Report PNNL-15564, Dec. 2005. Prepared for the Puget Sound Naval Shipyard and Intermediate Maintenance Facility Project ENVVEST Bremerton, Washington, under Contract DE-AC06-76RLO 1830. Pacific Northwest National Laboratory Richland, Washington, 288 pp.

Brandenberger J.M., C.R. Suslick, and R.K. Johnston. 2006. Biological Sampling and Analysis in Sinclair and Dyes Inlets, Washington: Chemical Analyses for 2005 Puget Sound Biota Study. Report PNNL-15834 May 2006. Prepared for the Puget Sound Naval Shipyard and Intermediate Maintenance Facility Project ENVVEST Bremerton, Washington, under Contract DE-AC06-76RLO 1830. Pacific Northwest National Laboratory Richland, Washington, 125 pp.

Brandenberger J.M., C.R. Suslick, and R.K. Johnston. 2006. Biological Sampling and Analysis in Sinclair and Dyes Inlets, Washington: Chemical Analyses for the Caged Mussel Study. Report PNNL-15835 May 2006. Prepared for the Puget Sound Naval Shipyard and Intermediate Maintenance Facility Project ENVVEST Bremerton, Washington, under Contract DE-AC06-76RLO 1830. Pacific Northwest National Laboratory Richland, Washington, 122 pp.

Brandenberger J.M., C.R. Suslick, R.K. Johnston. 2006. Data Report: Metal and Conventional Water Chemistry Data for the 2005 Ambient Marine and Model Boundary Events in Support of the Storm Water Studies in Sinclair and Dyes Inlet, Washington. Report PNNL-15594, January 2006. Prepared for the Puget Sound Naval Shipyard and Intermediate Maintenance Facility Project ENVVEST Bremerton, Washington, under Contract DE-AC06-76RLO 1830. Pacific Northwest National Laboratory Richland, Washington, 100 pp.

Brandenberger, J.M,. C.W. May, V. Cullinan, R.K. Johnston, D.E. Leisle, B. Beckwith, G. Sherrell, D. Metallo, and R. Pingree. 2007. 2003-2005 Contaminant Concentrations in Storm Water from Sinclair/Dyes Inlet Watershed a Subasin of Puget Sound, WA, USA. Proceedings of the 2007 Georgia Basin Puget Sound Research Conference, Puget Sound Action Team and Environment Canada.

Ceruti, M.G., L. Duffy, and Y.M. Arias-Thode. 2007. Conference Poster Paper. Analysis of Policy and Standards for Joint C4ISR Network Technologies. IEEE Workshop on Policies for Distributed Systems and Networks. Bologna, Italy. June 2007.

Chadwick D.B., A. Blake, I. Rivera-Duarte, G. Rosen, P.F. Wang, D. DiToro, P. Paquin, R. Santore, and B. Wu. 2005. Integrated compliance model for predicting fate and effects of copper in DoD harbors. Complementing a fate & effects model with a biotic ligand model for seawater. "Partners in Environmental Technology" Technical Symposium and Workshop, Strategic Environmental Research and Development Program and Environmental Security Technology Certification Program, Washington, D.C., November 29 - December 1, 2005.

Chadwick D.B., I. Rivera-Duarte, A. Blake, P.F. Wang, G. Rosen, A. Zirino, T. Boyd, J. Gieskes, and O. Holm-Hansen. 2004. Modeling copper speciation, fate and effects in DoD harbors. "Partners in Environmental Technology" Technical Symposium and Workshop, Strategic Environmental Research and Development Program and Environmental Security Technology Certification Program, Washington, D.C., November 30 - December 2, 2004.

Chadwick D.B., I. Rivera-Duarte, A. Zirino, A. Blake, and C. Katz. 2003. Modeling as an Environmental Management Tool for Copper Release to San Diego Bay, California. Society of Environmental Toxicology and Chemistry, Asia Pacific Conference, Christchurch, New Zealand, September 28 - October 1, 2003.

Chadwick D.B., I. Rivera-Duarte, A. Zirino, P.F. Wang, C. Katz, and A. Carlson. 2002. Modeling the Mass Balance and Fate of Copper in San Diego Bay. 11th International Congress on Marine Corrosion and Biofouling, University of San Diego, San Diego, California, July 22-26, 2002.

Chadwick D.B., I. Rivera-Duarte, and A. Zirino. 2002. Mass Balance and Speciation of Copper in San Diego Bay, California. Society of Environmental Toxicology and Chemistry 23rd Annual Meeting, Salt Lake City, Utah, November 16-20, 2002.

Chadwick D.B., I. Rivera-Duarte, and A. Zirino. 2002. Modeling of copper toxicity from chemical speciation and physicochemical conditions in San Diego Bay. California and the World Ocean '02 Conference, "California’s Ocean Resources: An Agenda for the Future," Santa Barbara, California, October 27-30, 2002.

Chadwick D.B., I. Rivera-Duarte, G. Rosen, and A. Zirino. 2001. A whole-basin approach for the study of toxicity of copper in coastal embayments. "Partners in Environmental Technology" Technical Symposium and Workshop, Strategic Environmental Research and Development Program and Environmental Security Technology Certification Program, Washington, D.C., November 27-29, 2001.

Chadwick D.B., I. Rivera-Duarte, G. Rosen, C. Katz, A. Blake, P.F. Wang, T. Boyd, and A. Zirino. 2003. Management of copper loadings in heavily used bays. "Partners in Environmental Technology" Technical Symposium and Workshop, Strategic Environmental Research and Development Program and Environmental Security Technology Certification Program, Washington, D.C., December 2-4, 2003.

Chadwick D.B., I. Rivera-Duarte, G. Rosen, P.F. Wang, and A. Zirino. 2002. Evaluation and modeling of environmental and toxicological conditions of copper and zinc in coastal basins. "Partners in Environmental Technology" Technical Symposium and Workshop, Strategic Environmental Research and Development Program and Environmental Security Technology Certification Program, Washington, D.C., December 3-5, 2002.

Chadwick D.B., I. Rivera-Duarte, G. Rosen, P.F. Wang, P.R. Paquin, A.C. Ryan, R.C. Santore, and W. Choi. 2006. Modeling Copper Compliance in DoD Harbors. "Partners in Environmental Technology" Technical Symposium and Workshop, Strategic Environmental Research and Development Program and Environmental Security Technology Certification Program, Washington, D.C., November 28-30, 2006.

Chadwick D.B., P.-F. Wang, I. Rivera-Duarte, and A. Zirino. 2003. Harbor modeling of fate and speciation of copper: San Diego Bay case study. Prevention of Pollution from Ships, Shipyards, Drydocks, Ports and Harbors International Symposium, New Orleans, LA, November 5-7, 2003.

Chadwick D.B., S. Stanley, S.H. Lieberman and C.E. Reimers. 1992. A benthic flux chamber for monitoring pollution exchange rates at the sediment-water interface, Proceedings of MTS '93, Long Beach, Ca, 1:196-206.

Chadwick, D.B., C.N. Katz, and J. Largier. 1995. Contaminant Transport Measurements in San Diego Bay, In: Proceeding of Oceans '95 Meeting, October 1995, pp. 1691-1699.

Chadwick, D.B., C.N. Katz, J.G. Groves, A.R. Carlson, C.F. Smith, R.J. Paulsen, D. O'Rourke, and N. Gahr. 2001. Anacostia River Seepage & Porewater Survey Report, Report to the Anacostia Watershed Toxics Alliance, February 2001.

Chadwick, D.B., K. Richter and D. Sutton. 1996. Spatial and seasonal variations in pollution transport mechanisms in San Diego Bay. 1996.

Champ, M.A. and P.F. Seligman (eds). 1996. Organotin: Environmental Fate and Effects. Chapman and Hall, New York. 623 pp.

Champ, M.A. and P.F. Seligman. 1996. Research information requirements associated with the environmental fate and effects of organotin compounds. pp. 601-616 in: M.A. Champ and P.F. Seligman (eds.), Organotin, Environmental Fate and Effects. Chapman and Hall, New York.

Crecelius, E., R.K. Johnston, M. Miller, J. Brandenberger, J. Leather, and J. Guerrero. 2003. Contaminant Mass Balance for Sinclair and Dyes Inlets, Puget Sound, WA. Proceedings of the Georgia Basin Puget Sound Research Conference, Vancouver, BC, Canada, April 2, 2003.

George, R.D., C. In, R.K. Johnston, P.F. Seligman, R.D. Gauthier, and W.J. Wild. 2005. Seawater leaching investigation of polychlorinated biphenyls from solid matrices. In: Proceedings Oceans 2005, IEEE and MTS, Washington, D.C., September 18-23, 2005.

Grovhoug, J.G., P.F. Seligman, G. Vafa and R.L. Fransham. 1986. Baseline Measurements of Butyltin in U.S. Harbors and Estuaries. In: Proceedings of the Organotin Symposium of the Oceans ‘86 Conference, Washington D.C. Marine Technology Society, Washington, D.C. pp. 1283-1288.

Grovhoug, J.G., P.F. Seligman, A.O. Valkirs and R.L. Fransham. 1989. Monitoring of tributyltin in the marine environment. pp. 525-529 in: Proceedings of the Oceans '89 Conference, Vol. 2, September 18-21, 1989, Seattle, WA.

Grovhoug, J.G., R.L. Fransham, A.O. Valkirs and B.M. Davidson. 1996. Tributyltin concentrations in water, sediment, and bivalve tissues in San Diego Bay and Hawaiian harbors. In: Organotin: Environmental Fate and Effects. Chapman and Hall, New York.

Haslbeck, E., A. Valkirs, P. Seligman, A. Zirino, I. Rivera-Duarte, J. Caso, and E. Chen. 2000. Release rate determination and interpretation for copper antifouling coatings. pp. 329-348 in: Assessing the Future of Coating Work. The Proceedings of the PCE 2000 Conference and Exhibition, March 8-10, 2000, Genoa, Italy.

Huggett, R.J., D.A. Evans, W.G. MacIntyre, M.A. Unger, P.F. Seligman and L.W. Hall, Jr. 1996. Tributyltin concentration in waters of the Chesapeake Bay. pp. 485-501 in: M.A. Champ and P.F. Seligman (eds.), Organotin, Environmental Fate and Effects. Chapman and Hall, New York.

Johnston, R.K, W.R. Munns, Jr., F.T. Short, and S. Hahn. 1994. The Use of Ecological Risk Assessment Data to Establish Surface Water and Sediment Media Protection Standards for the Portsmouth Naval Shipyard, Kittery, Maine, USA. Paper published in Proceedings of Environmental Restoration Opportunities Conference (EROC) October 1994, Munich Germany, pp. 448-464.

Johnston, R.K. 2006. Puget Sound Naval Shipyard & Intermediate Maintenance Facility Project ENVVEST Community Update June 2006. Brochure and CD. Marine Environmental Support Office-NW, Space and Naval Warfare Systems Center, Bremerton, WA. August 2006. Ecology Publication Number 06-10-54.

Johnston, R.K. P.F. Wang, D. Small, K. Fresh. 2007. A Hydrodynamic Simulation of a Conservative Tracer to Evaluate Dispersion of Out-Migrating Salmon in Sinclair Inlet, WA. Proceedings of the 2007 Georgia Basin Puget Sound Research Conference, Puget Sound Action Team and Environment Canada.

Johnston, R.K., and D.W. Nixon. 1994. Cleaning Up Hazardous Waste Disposal Sites in the Coastal Zone: A Review of the Federal and State Legal Requirements for Remediation at Allen Harbor, Narragansett Bay, Rhode Island. Conference Proceedings: Organizing for the Coast, The Coastal Society, Thirteenth International Conference, April 5-8, 1992 Washington D.C., pp. 509-523.

Johnston, R.K., and P.F. Wang. 2005. A Partnership for Modeling the Marine Environment of Puget Sound, Washington - Puget Sound Naval Shipyard/Space and Naval Warfare Systems Center Report. FY2005 Progress Report. National Ocean Partnership Program, Office of Naval Research.

Johnston, R.K., and S. Albertson. 2005. Current Meter Study for Agate, Port Orchard, and Rich Passages Study Plan. Puget Sound Marine Environmental Modeling and Project ENVVEST.

Johnston, R.K., C.W. May, V.S. Whitney, J.M. Wright, and B. Beckwith. 2004. Fecal Coliform Model Verification Sampling Plan Winter 2004. Addendum to the Fecal Coliform Total Maximum Daily Load Study Plan For Sinclair and Dyes Inlets. Prepared by Puget Sound Naval Shipyard & Intermediate Maintenance Facility Project ENVVEST For Washington State Department of Ecology Assessments Sections. February 19, 2004.

Johnston, R.K., D.E. Leisle, J.M. Brandenberger, S.A. Steinert, M. Salazar, and S. Salazar. 2007. Contaminant Residues in Demersal Fish, Invetebrates, and Deployed Mussels in Selected Areas of the Puget Sound, WA. Proceedings of the 2007 Georgia Basin Puget Sound Research Conference, Puget Sound Action Team and Environment Canada.

Johnston, R.K., G.M. Sherrell, D. Leisle, W. Kendra, S. Lawrence, M. Rylko, M. Turvey, C.W. May, M. Miller, K.E. Richter, T. Ostrom, M. Mecham, D. Tucker, and J. Zimny, J. 2004. Cooperative Watershed Studies to Develop Water Cleanup Plans for Sinclair and Dyes Inlets, Washington. Paper presented at the Society of Environmental Toxicology and Chemistry Fourth World Congress, November 16, 2004, Portland, OR.

Johnston, R.K., H. Halkola, R.George, C. In, R. Gauthier, W. Wild, M. Bell, and R. Martore. 2003. Assessing the Ecological Risk of Creating Artificial Reefs from ex-Warships. Proceeding of Oceans 2003 Marine Technology and Ocean Science Conference, September 22-36, 2003, San Diego, CA, pp. 851-860.

Johnston, R.K., H. Halkola, W.J. Wild, R.G. Gauthier, R. George, C. In, M. Bell, and R. Martore. 2005. The Ecological Risk of Using Former Navy Vessels to Construct Artificial Reefs: An Initial and Advanced Screening Level Ecorisk Assessment Final Report - May 30 2005. SSC San Diego, CA. 598 pp.

Johnston, R.K., J. Brandenberger, C.W. May, V.S. Whitney, J.M. Wright, B. Beckwith, and R. Pingree. 2005. Storm Event Sampling in the Sinclair and Dyes Inlet Watershed: FY2005 Quality Assurance Project Plan. Prepared by Puget Sound Naval Shipyard & Intermediate Maintenance Facility Project ENVVEST For Washington State Department of Ecology Assessments Sections. January 18, 2005.

Johnston, R.K., M.L. Rideout, C.W. May, and G.M. Sherrell. 2001. A Watershed-based Ecological Risk Assessment for Sinclair Inlet, Washington. Proceedings of the 2001 Puget Sound Research Conference, February 12-14, 2001, Bellevue, WA.

Johnston, R.K., R. George, K.E. Richter, P.F. Wang, and W.J. Wild, 2006. EX-ORISKANY Artificial Reef Project: Ecological Risk Assessment. Final Report January 22, 2006. Prepared for: Program Executive Office Ships (PMS333) Naval Sea Systems Command. SSC San Diego, CA. 268 pp.

Johnston, R.K., R. George, K.E. Richter, P.F. Wang, and W.J. Wild. 2005. EX-ORISKANY Artificial Reef Project: Ecological Risk Assessment. Draft Final Report June 14, 2005. Prepared for: Program Executive Office Ships (PMS333) Naval Sea Systems Command. SSC San Diego, CA. 268 pp.

Johnston, R.K., S.A. Kurtz, R.L. DeGrandchamp, and M.G. Barron. 2005. A Guide for Determining The Risk of PCB Exposure to Ecological Receptors. Final Report. Prepared for Naval Facilities Engineering Command (NAVFAC) Risk Assessment Workgroup, Washington Navy Yard, Washington, D.C., December 2005.

Johnston, R.K., W.R. Munns, Jr., and D.E. Nacci. 2000. A Probabilistic Analysis To Determine Ecological Risk Drivers. In: Environmental Toxicology And Risk Assessment: Science, Policy, And Standardization - Implications For Environmental Decisions: Tenth Volume, ASTM STP 1403, B. M. Greenberg, R. N. Hull, M. H. Roberts, Jr., and R. W. Gensemer (eds.)., American Society for Testing and Materials, West Conshohocken.

Katz, C.N, P.L. Noble, D.B. Chadwick, B. Davidson, and R.D. Gauthier. 2004. Sinclair Inlet Water Quality Assessment: Water Quality Surveys Conducted September 1997, March 1998, and July 1998. Prepared for Puget Sound Naval Shipyard Project ENVVEST. SSC San Diego, CA, January 2004.

Katz, C.N. 2005. "Evaluating storm water impacts on receiving waters." Currents Magazine -The Navy's Environmental Magazine, Spring 2005.

Katz, C.N., A. Blake, G. Rosen, S. Steinert, and D.B. Chadwick. 2004. Evaluating Receiving Water Impacts in Receiving Waters, Presentation at the Society of Environmental Toxicology and Chemistry Asia/Pacific Conference, September 2004.

Katz, C.N., A. Carlson-Blake, and D.B. Chadwick. 2001. Spatial and Temporal Evolution of Storm Water Plumes Impacting San Diego Bay. Poster Presentation at Estuarine Research Federation Annual Meeting, St. Pete Beach, FL, November 2001.

Katz, C.N., A.R. Carlson, and D.B. Chadwick. 2000. Anacostia River Water Quality Assessment, Report to the Anacostia Watershed Toxics Alliance, December 2000.

Katz, C.N., and A. Blake. 2004. Puget Sound Naval Shipyard & Intermediate Maintenance Facility Dry Dock Discharge Dye Study. SSC San Diego, CA.

Katz, C.N., and D. B. Chadwick. 1994. Synoptic In Situ Mapping of Coastal Waters; Application and Implication to Remote Sensing. Poster presentation at the American Geophysical Union/American Society of Limnology and Oceanography Ocean Sciences Meeting 1994, EOS Transactions, 75:3, p. 193.

Katz, C.N., and D.B. Chadwick. 1993. Synoptic Mapping and Modeling of a Sewage Outfall Plume. pp. 207-215 in: Proceedings of the Marine Technology Society, 1993.

Katz, C.N., and G. Rosen. 2004. Evaluation of Storm Water Impacts on Receiving Waters from Navy Facilities, Presentation at the Society of Environmental Toxicology and Chemistry National Conference, September 2004.

Katz, C.N., and G. Rosen. 2005. Evaluating Storm Water Impacts - Monitoring the Receiving Environment Using a Floating Bioassay Laboratory System, In: Proceedings of the Marine Technology Society, Oceans 2005 Conference, Washington, D.C., September 18-23, 2005.

Katz, C.N., B. Davidson, R.K. Johnston, and B. Beckwith, 2004. Sinclair Inlet Dye Study: Sampling Plan for Puget Sound Naval Shipyard & Intermediate Maintenance Facility Dry Dock and Storm Water Outfalls (April 2004). SSC San Diego, CA

Katz, C.N., D.B. Chadwick, and G.S. Douglas, G.S. 1991. Real-time Fluorescence Measurements Intercalibrated with GC-MS. In: Proceedings of Oceans '91 meeting, 1-3 October, 1991, Oceanic Engineering Society of IEEE, 91CH3063-5, pp. 351-358.

Katz, C.N., D.B. Chadwick, and A.E. Patterson. 1993. Estuarine Dynamics and Water Quality Assessment, A Case Study At Naval Shipyard Portsmouth, Kittery, Maine. Poster presentation at the Society of Environmental Toxicology and Chemistry Conference on Ecological Risk Assessment, 8-9 October, 1993.

Katz, C.N., D.B. Chadwick, and L. Skinner. 1995. Input of Polynuclear Aromatic Hydrocarbons to San Diego Bay from Creosote Pilings, In: Proceeding of Oceans '95 Meeting, October 1995, pp. 1722-1729.

Katz, C.N., D.B.Chadwick, A. Robbat Jr., B. Abraham, and R. Pruell .1992. Near Real-Time Sediment PCB and PAH Analyses: A Comparison with Laboratory Methods. American Geophysical Transactions, EOS 72:51, p. 82.

Katz, C.N., P.L. Noble, D.B. Chadwick, B. Davidson, and R.D. Gauthier. 1999. Sinclair Inlet Water Quality Assessment, Report. 68 pp.

Katz, C.N., P.L. Noble, D.B. Chadwick, B. Davidson, and R.D. Gauthier. 2004. Puget Sound Wastewater Technology Evaluation And Research Project Sinclair Inlet Water Quality Assessment, Special Report to Environmental Investment (ENVVEST) Project, Puget Sound Naval Shipyard, January 2004.

Kirtay, V.J., J.H. Kellum, and S.E. Apitz. 1997. The validation of field-portable X-ray fluorescence spectrometry for the analysis of metals in marine sediments. In: Proceedings of an International Symposium on Field Screening Methods for Hazardous Wastes and Toxic Chemicals, Las Vegas, NV, VIP-71, 822-837.

Kirtay, V.J., S.E. Apitz, D. Lapota and J.M. Leather. 2001. Rapid Sediment Characterization Tools for Ecological Risk Assessments, EPA Tech Trends No. 40, EPA Solid Waste and Emergency Response, EPA 542-N-01-001.

Lapota, D. 1987. Final data report on bioluminescence measurements and causitive plankton from Vestfjord, Norway, August 1986. 144 pp.

Lapota, D. 1987. Planktonic bioluminescence measurements in arctic waters. EOS, Vol. 68, p. 1695.

Lapota, D. Long Term and Seasonal Changes in Dinoflagellate Bioluminescence in the Southern California Bight, Ph.D. Dissertation, University of California, Santa Barbara, 1998, pp. 193.

Lapota, D., and J.R. Losee. 1983. Records of bioluminescence in marine plankton from the Norwegian Sea and waters off North Cape. EOS, Vol. 64, p. 1102.

Lapota, D., D. Chadwick, C.N. Katz, B. Davidson, A. Patterson, and D. Duckworth. 1993. 1993 Fall, Winter, Spirng, and Summer Seawater Characteristics in San Diego Bay: Biological, Optical, Chemical, and Physical Measurements, Report to the Naval Research Laboratory Remote Sensing Division, December 1993.

Lapota, D., D. Duckworth, S. Paden, J. Groves, G. Rosen, D.E. Rosenberger, and J.F. Case. Seasonal planktonic bioluminescence in the Southern California Bight. The Responses of Marine Organisms to Their Environments. pp. 79-85 in: L.E. Hawkins, S. Hutchinson (eds.), 1997, Proceedings of the 30th European Marine Biology Symposium, University of Southampton, United Kingdom.

Lapota, D., D.E. Rosenberger, and D. Duckworth, 1994. A bioluminescent dinoflagellate assay for detecting toxicity in coastal waters. pp. 156-159 in: A.K. Campbell, L.K. Kricka, and P.E. Stanley (eds.), Bioluminescence and Chemiluminescence: Fundamental and Applied Aspects. John Wiley and Sons Ltd., United Kingdom.

Lapota, D., G.J. Moskowitz, D.E. Rosenberger, and J.G. Grovhoug. 1994. The use of stimulable bioluminescence from marine dinoflagellates as a means of detecting toxicity in the marine environment. pp 3-18 in: Environmental Toxicology and Risk Assessment: 2nd Volume, Stp 1173, J.W. Gorsuch, F.J. Dwyer, C.G. Ingersoll, and T.W. LaPoint (eds.), American Society for Testing and Materials, Philadelphia, PA.

Lapota, D., S. Paden, D. Duckworth, D.E. Rosenberger, and J.F. Case. 1994. Coastal and oceanic bioluminescence trends in the Southern California bight using MOORDEX bathyphotometers. pp. 127-130 in: A.K. Campbell, L.J. Kricka, and P.E. Stanley (eds.), Bioluminescence and Chemiluminescence: Fundamental and Applied Aspects. John Wiley & Sons Ltd., United Kingdom.

Lares, M.L., S.G. Marinone, A. Beck, and I. Rivera-Duarte. 2007. Impact of surface water circulation on the distributions of Cd and Ag in Bahía de Todos Santos, México. International Union of Geodesy and Geophysics, IUGG XXIV General Assembly "Earth: our changing planet", Perugia, Italy, July 2007.

Leisle, D.E., G.M. Sherrell, R.K. Johnston, P.F. Wang, D. Ginn, C. Berthiaume, E. Crecelius, J. Brandenberger, N. Kohn, P. McLaren, and B.E. Skahill. 2005. Integrating Sediment Cleanup and Watershed Management for Sinclair and Dyes Inlets, WA USA. Third International Conference on Remediation of Contaminated Sediments, New Orleans, LA, January 24-27, 2005.

Losee, J., D. Lapota, and S.H. Lieberman, 1985. Bioluminescence: a new tool for oceanography. pp. 211-234 in: A. Zirino (ed.), Mapping Strategies in Chemical Oceanography, Advances in Chemistry Series, No. 209, American Chemical Society, Washington, D.C.

Losee, J.R., and D. Lapota. 1981. Bioluminescence measurements in the Atlantic and Pacific. pp. 143-152 in: K.H. Nealson (ed.), Bioluminescence: Current Perspectives, Burgess Publishing Co., Minneapolis, MN.

Losee, J.R., D. Lapota, M.L. Geiger, and S.H. Lieberman. 1984. Bioluminescence in the marine environment. pp. 77-98 in: Ocean Optics VII, M.A. Blizard (ed.), Proceedings SPIE, Vol. 489.

Mathieu, J., J. James, J. Melhuish, P. Mahoney, Y.M. Arias-Thode, M. Colosimo, and O. Peters. 2007. Conference Poster Paper Multi-Scale Modeling of Bacterial Bioremediation. American Society of Agricultural and Biological Engineers. Paper Number: 072167. Minneapolis, MN. June 2007.

May, C.W. V.I. Cullinan, J.M. Brandenberger, C. Judd, and R.K. Johnston. 2007. Development Of An Empirical Water Quality Model For Stormwater Based on Watershed Land-Use in Puget Sound. Proceedings of the 2007 Georgia Basin Puget Sound Research Conference, Puget Sound Action Team and Environment Canada.

May, C.W. V.I. Cullinan, R.K. Johnston, P.F. Wang, S. Lawrence, M.L. Roberts, G.M. Sherrell, V.S. Whitney, D.E. Leisle, B.E. Skahill, T. Ostrom, J. Kiess, M. Mecham, and M. Turvey. 2007. An Assessment of Fecal Coliform Bacteria in the Sinclair/Dyes Inlet Watershed, Puget Sound, WA, USA. Proceedings of the 2007 Georgia Basin Puget Sound Research Conference, Puget Sound Action Team and Environment Canada.

May, C.W., D. Woodruff, V. Cullinan, N. Evans, L. O’Rourke, L. Miller, R.K. Johnston, P.F. Wang, H. Halkola, K.E. Richter, B. Davidson, V. Whitney, and J. Wright, 2005. An analysis of microbial pollution in the Sinclair-Dyes Inlet Watershed. Washington Department of Ecology, Report No. 05-03-042, 428 pp. + Appendices.

May, C.W., R. Johnston, V. Cullinan, S. Lawrence, M. Roberts. 2007. Watershed-Based Assessment, Modeling, and Clean-Up of Microbial Pollution in a Puget Sound Embayment. Proceedings of the 2007 Georgia Basin Puget Sound Research Conference, Puget Sound Action Team and Environment Canada.

Munns, W.R., C. Mueller, B.A. Rogers, S. Benyi, S. Anderson, T. Gleason, W.G. Nelson, and R.K. Johnston. 1993. Allen Harbor Risk Assessment Pilot Study: Phase III Final Report. Environmental Research Laboratory Narragansett Contribution Number 1428. 135pp.

Munns, W.R., C. Mueller, R. Comeleo, D.J. Cobb, S. Anderson, G.G. Pesch, W.G. Nelson, and R.K. Johnston. 1993. Allen Harbor Risk Assessment Pilot Study: Phase II Draft Final Report. Environmental Research Laboratory Narragansett Contribution Number 1427. 220 pp.

Nohara, T., P. Weber, C. Krasnor, S. Gauthreaux, M. Brand, and G. Key. 2005. Affordable Avian Radar Surveillance Systems for Natural Resource Management and BASH Applications. IEEE International Radar Conference, Arlington, VA, May 9-12, 2005.

Putnam, M., I. Rivera-Duarte, and E. Arias. 2005. Real-time in situ measurement of total recoverable copper. Society of Environmental Toxicology and Chemistry, Environmental Science in a Global Society: SETAC's Role in the Next 25 Years, SETAC North America 26th Annual Meeting, Baltimore, MA, November 13-17, 2005.

Richter, K. 1988. Bioluminescence prediction from acoustic and satellite data. Proceedings, Volume I, Navy Innovative Research/Investigation and Exploratory Development Symposium. John Hopkins/ Applied Physics Laboratory, June 20-22, 1988.

Richter, K., D.B. Chadwick, and L.M. Tender. 2010. Microbial fuel cell design sufficient to power a hydrophone over a several month period, 217th Electrochemical Society Meeting, Vancouver B.C., April 24-29, 2010.

Richter, K., C. Maxon, and C. Collins. 1997. Remedial Investigation/ RCRA Facility Investigation Report Site-1 Shoreline Sediments. Naval Air Station North Island, San Diego CA.

Richter, K., C. Maxon, and C. Perry. 2003. Remedial Investigation/ RCRA Facility Investigation Report Site-9 Shoreline Sediments. Naval Air Station North Island, San Diego CA.

Richter, K., D. Sutton, L Reidy, and R.T. Cheng. 1996. Comparison of water velocity field data and model predictions in San Diego Bay derived from two- dimensional, semi-implicit, finite difference model TRIM. Proceedings Oceans '95 MTS/IEEE, San Diego, CA, October 9-12, 1995.

Richter, K., M. Wilson-Nichols, and C. Maxon. 1999. Remedial Investigation/RCRA Facility Investigation Report Site-10 Radioactive Slag. Naval Air Station North Island, San Diego CA.

Richter, K., M. Perdue, and A. Patterson. 1996. Seasonal sediment load, light attenuation and eel grass coverage in San Diego Bay. Proceedings Oceans '95 MTS/IEEE, San Diego, CA, October 9-12, 1995.

Richter, K.E. 2004. CH3D Hydrodynamic Model Validation Report. Space and Naval Warfare Systems Center, San Diego, CA. September 12, 2004.

Rivera-Duarte, I., D.B. Chadwick, G. Rosen, L. Kear-Padilla, and A. Zirino. 2003. Chemical speciation controlling toxicity of copper or zinc in coastal embayments. Society of Environmental Toxicology and Chemistry, Asia Pacific Conference, Christchurch, New Zealand, September 28 - October 1, 2003.

Rivera-Duarte, I., G. Rosen, D. Lapota, and A. Zirino. 1999. Copper toxicity and copper complexation in San Diego Bay, 20th Annual Meeting Society of Environmental Toxicology and Chemistry, Philadelphia, PA, November 14-18, 1999.

Rivera-Duarte, I., G. Rosen, D. Lapota, and A. Zirino. 2000. Free copper ion activity, complexation capacity and toxicity in San Diego Bay waters. Office of Naval Research Second Copper Workshop, Annapolis, MD, November 1-2, 2000.

Rivera-Duarte, I., G. Rosen, D.B. Chadwick, D. Lapota, and A. Zirino. 2001. The relationship between complexation capacity and toxicity of copper to marine invertebrates. 16th Biennial Conference "An Estuarine Odyssey" of the Estuarine Research Federation, St. Pete Beach, FL, November 7-8, 2001.

Rivera-Duarte, I., G. Rosen, D.B. Chadwick, D. Lapota, and A. Zirino. 2002. Effects of Copper in Heavily Impacted Coastal Embayments: Chemical Speciation and Toxicity in San Diego Bay. 11th International Congress on Marine Corrosion and Biofouling, University of San Diego, San Diego, CA, July 22-26, 2002.

Rivera-Duarte, I., G. Rosen, D.B. Chadwick, L. Kear-Padilla, and A. Zirino. 2003. Speciation and bioavailability of copper in San Diego Bay. Free copper ion as the main factor to study the effect of copper leaching from antifouling paints. Prevention of Pollution from Ships, Shipyards, Drydocks, Ports and Harbors International Symposium, New Orleans, LA, November 5-7, 2003.

Rivera-Duarte, I., M. Putnam, and E. Arias. 2003. Total copper analyzer for rapid in situ characterization of effluent discharges. "Partners in Environmental Technology" Technical Symposium and Workshop, Strategic Environmental Research and Development Program and Environmental Security Technology Certification Program, Washington, D.C., December 2-4, 2003.

Rivera-Duarte, I., M. Putnam, and E. Arias. 2004. Real time, in situ measurement of total recoverable copper in effluents. "Partners in Environmental Technology" Technical Symposium and Workshop, Strategic Environmental Research and Development Program and Environmental Security Technology Certification Program, Washington, D.C., November 30 - December 2, 2004.

Rivera-Duarte, I., M. Putnam., and E. Arias. 2005. Total recoverable copper in effluents in real time. "Partners in Environmental Technology" Technical Symposium and Workshop, Strategic Environmental Research and Development Program and Environmental Security Technology Certification Program, Washington, D.C., November 29 - December 1, 2005.

Rohr, J., J. Schoonmaker, B. Chadwick, and K. Richter. 1996. Mixing and resuspension in the wakes of ships. In: Proceedings Oceans '95 MTS/IEEE, San Diego, CA, October 9-12, 1995.

Rosen G., D. Lapota, M.A. Robayo, and I. Rivera-Duarte. 2000. Comparison of heavy metal toxicity observed in two rapid bioluminescent tests: QuikLite and Microtox. Society of Environmental Toxicology and Chemistry, 2000.

Rosen G., I. Rivera-Duarte, D.B. Chadwick, C. Zacharias, R. Santore, and P. Paquin. 2005. Relating copper bioaccumulation and toxicity in marine invertebrate larvae for seawater Biotic Ligand Model development. Society of Environmental Toxicology and Chemistry, Environmental Science in a Global Society: SETAC’s Role in the Next 25 Years, SETAC North America 26th Annual Meeting, Baltimore, MD, November 13-17, 2005.

Rosen G., I. Rivera-Duarte, L. Kear-Padilla, and D.B. Chadwick. 2003. Effects of copper on marine invertebrate larvae in surface water from San Diego Bay, CA. Prevention of Pollution from Ships, Shipyards, Drydocks, Ports and Harbors International Symposium, New Orleans, LA, November 5-7, 2003.

Rosen, G., I. Rivera-Duarte, and R.K. Johnston. 2004. Sinclair Inlet Toxicity Assessment: Sampling Plan for Puget Sound Naval Shipyard & Intermediate Maintenance Facility Surface Water Copper Bioavailability and Toxicity Study. 6 APRIL 2004. SSC San Diego, CA.

Ryan, A.C., R.C. Santore, P.R. Paquin, G. Rosen, I. Rivera-Duarte, D.B. Chadwick, and W. Arnold. 2006. Development of a Biotic Ligand Model for saltwater: Copper speciation, accumulation, and toxicity predictions. Society of Environmental Toxicology and Chemistry, SETAC North America 27th Annual Meeting, Montreal, Canada, November 5-9, 2006.

Santore, R.V., P.R. Paquin, A.C. Ryan, J. Meyer, G. Rosen, I. Rivera-Duarte, D.B. Chadwick, and P. Antunes. 2006. The use of metal accumulation data for understanding and predicting metal toxicity. Society of Environmental Toxicology and Chemistry, SETAC North America 27th Annual Meeting, Montreal, Canada, November 5-9, 2006.

Seligman, P.F., A.O. Valkirs, J.S. Caso, I. Rivera-Duarte, and E. Haslbeck. 2001. Copper release rates from antifouling marine coatings and their relationship to loading and toxicity in San Diego Bay, California. pp. 64-81 in: Proceedings Pollution Prevention from Ships and Shipyards Symposium, Oceanology International 2001 Conference, Miami, FL, April 4-5, 2001.

Seligman, P.F., C.M. Adema, J. Grovhoug, R.L. Fransham, A.O. Valkirs, M.O. Stallard and P.M. Stang. 1996. Environmental loading of tributyltin from drydocks and ship hulls. pp. 405-428 in: M.A. Champ and P.F. Seligman (eds.), Organotin: Environmental Fate and Effects. Chapman and Hall, New York.

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Seligman, P.F., J.G. Grovhoug, and K. Richter. 1986. Measurements of butyltins in San Diego Bay, CA: A monitoring strategy. In: Oceans '86 Proceedings, Volume 4, Organotin Symposium. Washington D.C. September 23-25, 1986.

Seligman, P.F., R.J. Maguire, R.F. Lee, K.R. Hinga, A.O. Valkirs and P.M. Stang. 1996. persistence and fate of tributyltin in aquatic ecosystems, pp. 429-457 in: M.A. Champ and P.F. Seligman (eds.), Organotin, Environmental Fate and Effects. Chapman and Hall, New York.

Seligman, P.F., A.O. Valkirs, J.S. Caso, I. Rivera-Duarte, and E. Haslbeck, 2001. Copper release rates from antifouling marine coatings and their relationship to loading and toxicity in San Diego Bay, CA. pp. 64-81 in: Ships and Shipyards. Oceanology International 2001 Conference, Miami, FL, April 4-5, 2001.

Stang, P. M. and P.F. Seligman. 1986. Distribution and fate of butyltin compounds in the sediment of San Diego Bay. pp. 1256-1261 in: Proceedings, Oceans 1986 Conference, Vol. 4, Organotin Symposium, Washington, D.C., September 23-25, 1986.

Stang, P.M. and P.F. Seligman. 1987. In situ adsorption and desorption of butyltin compounds from Pearl Harbor, Hawaii sediment. pp. 1386-1391 in: Proceedings, Oceans 1987 Conference, Halifax, Nova Scotia, Canada, September - October 1, 1987.

Sutton, D.W., B. Chadwick, and K. Richter. 1996. Computer model simulations of fuel spills at Ballast Point, San Diego Bay. In: Proceedings Oceans '95 MTS/IEEE, San Diego CA, October 9-12, 1995.

Thompson, J., G. Rosen, I. Rivera-Duarte, D.B. Chadwick, R.C. Santore, P.R. Paquin, and A.C. Ryan. 2006. Copper bioavailability and development of water quality standards in three marine estuaries. Society of Environmental Toxicology and Chemistry, SETAC North America 27th Annual Meeting, Montreal, Canada, November 5-9, 2006.

U.S. Navy, U.S. EPA, and Washington State Department of Ecology. 2002. FINAL DRAFT Fecal Coliform Total Maximum Daily Load Study Plan For Sinclair and Dyes Inlets. Draft Quality Assurance Project Plan Prepared by PSNS Project ENVVEST Regulatory Working Group For Washington State Department of Ecology Watershed Assessments Sections, October 4, 2002.

Valkirs, A.O., B. Davidson, L.L. Kear, R.L. Fransham, P.F. Seligman and J.G. Grovhoug. 1998. Use of Tributyltin by Commercial Sources and the U.S. Navy: Fate-and-Effects Assessment and Management of Impacts on the Marine Environment. pp. 133-166 in: de A. Peyster and K.E. Day (eds.), Ecological Risk Assessment: A Meeting of Policy and Science. Society of Environmental Toxicology and Chemistry, Pensacola, FL.

Wang, P.F., R.K. Johnston, H. Halkola, R.E. Richter, and B. Davidson. 2005. A Modeling Study of Combined Sewer Overflows in the Port Washington Narrows and Fecal Coliform Transport in Sinclair and Dyes Inlets, Washington. Prepared by SSC San Diego for Puget Sound Naval Shipyard & Intermediate Maintenance Facility Project ENVVEST, Final Report, June 22, 2005, 26 pp.

Wang, P.F., Q. Liao, R. George, and W. Wild. 2009. Predicting Releases of Munition Constituents from Breached Shells in the Marine Environment. 237th American Chemistry Society, National Meeting, Salt Lake City, UT, March 22-26, 2009.

Wang, P.F., Q. Liao, R. George, and W. Wild. 2011. Release Rate and Transport of Munitions Constituents from Breached Shells in Marine Environments. pp 317-340 in: M.A. Chappell, C.L. Price, and R.D. George (eds.), Environmental Chemistry of Explosives and Propellant Compounds in Soils and Marine Systems: Distributed Source Characterization and Remedial Technologies, ACS Symposium Series, Vol. 1069. American Chemical Society, Washington, D.C.

Wang, P.F., K. Richter, I. Rivera-Duarte, J. Germano, Q. Liao, and K. Markillie. 2013. Evaluation of Resuspension by Propeller Wash in DoD Harbors. Presentation and Poster for the Joint Interim Progress Review and Sediment Technical Meeting by SERDP/ESTCP, Arlington, VA, Feb 28, 2013.

Wotawa-Bergen, A.Q., D.B. Chadwick, K.E. Richter, L.M. Tender, C.E. Reimers, and Y. Gong. Operational testing of sediment microbial fuel cells in San Diego Bay, OCEANS 2010, Seattle, WA, September 20-23, 2010.

Zirino A., D.B. Chadwick, and I. Rivera-Duarte. 1998. Modeling and prediction of copper toxicity in San Diego Bay. 44th International Conference on Analytical Sciences and Spectroscopy, Kingston, Ontario, Canada, August 9-12, 1998.